Package: GSDA 1.0
GSDA: Gene Set Distance Analysis (GSDA)
The gene-set distance analysis of omic data is implemented by generalizing distance correlations to evaluate the association of a gene set with categorical and censored event-time variables.
Authors:
GSDA_1.0.tar.gz
GSDA_1.0.zip(r-4.7)GSDA_1.0.zip(r-4.6)GSDA_1.0.zip(r-4.5)
GSDA_1.0.tgz(r-4.6-any)GSDA_1.0.tgz(r-4.5-any)
GSDA_1.0.tar.gz(r-4.7-any)GSDA_1.0.tar.gz(r-4.6-any)
GSDA_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSDA/json (API)
| # Install 'GSDA' in R: |
| install.packages('GSDA', repos = c('https://xueyuancao.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/xueyuancao/gsda/issues
- kegg.ml.gsets - KEGG gene set data for the AML and CML pathways
- target.aml.clin - Clinical outcomes for AML TARGET Project
- target.aml.expr - RNA-seq expression from the AML TARGET project
microarraybioinformaticsgene expression
Last updated from:d7f71cb8b7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 167 | ||
| source / vignettes | OK | 182 | ||
| linux-release-x86_64 | OK | 122 | ||
| macos-release-arm64 | OK | 197 | ||
| macos-oldrel-arm64 | OK | 148 | ||
| windows-devel | OK | 93 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 126 | ||
| wasm-release | OK | 101 |
Exports:best.dist.corrcat.distdist.corrgsdaprep.gsdaprep.msigdbsurv.distU.centeruc.distwrite.gsda.csv.file
Dependencies:assertthatbabelgeneclicurldplyrgenericsgluelifecyclemagrittrmsigdbrpillarpkgconfigR6rlangtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Set Distance Analysis (GSDA) | GSDA-package GSDA |
| Best Distance Correlattion | best.dist.corr |
| Distance for a Categorical Variable | cat.dist |
| Distance Correlattion | dist.corr |
| Gene-Set Distance Analsysis (GSDA) | gsda |
| KEGG gene set data for the AML and CML pathways | kegg.ml.gsets |
| GSDA Data Preparation | prep.gsda |
| Preparation of MSigDB for GSDA | prep.msigdb |
| Print Method for Best Distance Correlation | print.bdc |
| Print Method for Distance Correlation | print.dcor |
| Print Method for GSDA Result | print.gsda.result |
| Distance of a Survival Endpoint | surv.dist |
| Clinical outcomes for AML TARGET Project | target.aml.clin |
| RNA-seq expression from the AML TARGET project | target.aml.expr |
| U Centering | U.center |
| U-centered Distance Matrix | uc.dist |
| Write GSDA Result to a Comma Delimited File | write.gsda.csv.file |
